refactor: enhance config handling and unify main entrypoint

Unify configuration parsing logic across entrypoints and clean up legacy script-side config paths.

internal/app/etl/extractors/process-with-retries.go

@@ -22,6 +22,7 @@ func (ex *GenericExtractor) ProcessPartitionWithRetries(
 	indexPrimaryKey int,
 	retryConfig config.RetryConfig,
 	chBatchesOut chan<- models.Batch,
+	fromJsonColumns []config.FromJsonItem,
 ) (int64, error) {
 	var totalRowsRead int64
 	currentParitition := partition
@@ -35,6 +36,7 @@ func (ex *GenericExtractor) ProcessPartitionWithRetries(
 			currentParitition,
 			indexPrimaryKey,
 			chBatchesOut,
+			fromJsonColumns,
 		)
 		// logrus.Debugf("Partition %v finished processing (%s.%s)", partition.Id, tableInfo.Schema, tableInfo.Table)
 		totalRowsRead += rowsRead
@@ -48,7 +50,7 @@ func (ex *GenericExtractor) ProcessPartitionWithRetries(
 
 			if currentParitition.RetryCounter >= retryConfig.Attempts {
 				return totalRowsRead, &custom_errors.JobError{
-					Msg:  fmt.Sprintf("Partition %v reached max retries", exError.Partition.Id),
+					Msg:  fmt.Sprintf("Partition %v reached max retries (%d)", currentParitition.Id, currentParitition.RetryCounter),
 					Prev: err,
 				}
 			}